Speeding up parallel GROMACS on high-latency networks
نویسندگان
چکیده
منابع مشابه
Speeding up parallel GROMACS on high-latency networks
We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clusters with only limited bandwidth and high latency. GROMACS 3.3 scales well on supercomputers like the IBM p690 (Regatta) and on Linux clusters with a special interconnect like Myrinet or Infiniband. Because of the high s...
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ژورنال
عنوان ژورنال: Journal of Computational Chemistry
سال: 2007
ISSN: 0192-8651,1096-987X
DOI: 10.1002/jcc.20703